Cluster: ShaoY_2019_ERR3406076_bin.13_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406076_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_89 | 101768 | 103246 | + | GH1 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_90 | 103258 | 104628 | + | 4.A.1.2.11 |
| pfam | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_91 | 104755 | 106887 | - | Radical_SAM_N | DUF3362 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_92 | 107152 | 107868 | + | 9.B.143.2.3 |
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_89
Type: CAZyme
Location: 101768 - 103246 (+)
Type: CAZyme
Location: 101768 - 103246 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_90
Type: TC
Location: 103258 - 104628 (+)
Type: TC
Location: 103258 - 104628 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_91
Type: pfam
Location: 104755 - 106887 (-)
Type: pfam
Location: 104755 - 106887 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_92
Type: TC
Location: 107152 - 107868 (+)
Type: TC
Location: 107152 - 107868 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406076_bin.13_k141_14187_89 | vegan > omnivore | 1.09892 | 0.01057 |
| ShaoY_2019_ERR3406076_bin.13_k141_14187_90 | vegan > omnivore | 1.10206 | 0.01057 |