Cluster: ShaoY_2019_ERR3406076_bin.13_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406076_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_73 | 77995 | 80334 | - | 3.A.3.5.15 |
| STP | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_74 | 80585 | 82669 | - | Pkinase |
| STP | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_75 | 82841 | 83803 | - | FHA |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_76 | 84391 | 86634 | + | 1.I.1.1.3 |
| STP | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_77 | 87256 | 88017 | + | Fer4 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_78 | 88361 | 88873 | + | 4.A.1.2.5 |
| pfam | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_79 | 88892 | 89746 | + | PRD | PRD | CAT_RBD |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_80 | 89846 | 91462 | + | 4.A.1.1.3 |
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_14187 | ShaoY_2019_ERR3406076_bin.13_k141_14187_81 | 91466 | 92848 | + | GH4 |
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_73
Type: TC
Location: 77995 - 80334 (-)
Type: TC
Location: 77995 - 80334 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_74
Type: STP
Location: 80585 - 82669 (-)
Type: STP
Location: 80585 - 82669 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_75
Type: STP
Location: 82841 - 83803 (-)
Type: STP
Location: 82841 - 83803 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_76
Type: TC
Location: 84391 - 86634 (+)
Type: TC
Location: 84391 - 86634 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_77
Type: STP
Location: 87256 - 88017 (+)
Type: STP
Location: 87256 - 88017 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_78
Type: TC
Location: 88361 - 88873 (+)
Type: TC
Location: 88361 - 88873 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_79
Type: pfam
Location: 88892 - 89746 (+)
Type: pfam
Location: 88892 - 89746 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_80
Type: TC
Location: 89846 - 91462 (+)
Type: TC
Location: 89846 - 91462 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_14187_81
Type: CAZyme
Location: 91466 - 92848 (+)
Type: CAZyme
Location: 91466 - 92848 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.