Cluster: ShaoY_2019_ERR3406076_bin.13_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406076_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_42 | 41102 | 42502 | + | GH1 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_43 | 42623 | 43966 | + | 4.A.3.2.2 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_44 | 44128 | 44430 | + | 4.A.3.2.9 |
| pfam | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_45 | 44440 | 44772 | + | PTS_IIA |
| sulfatase | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_46 | 44898 | 45581 | + | S1_11 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_47 | 45591 | 45899 | + | 4.A.3.2.3 |
| STP | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_48 | 46088 | 47041 | + | Glucokinase |
| pfam | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_49 | 47173 | 48096 | + | DHH | DHHA2 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_9297 | ShaoY_2019_ERR3406076_bin.13_k141_9297_50 | 48363 | 49721 | + | 2.A.33.1.1 |
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_42
Type: CAZyme
Location: 41102 - 42502 (+)
Type: CAZyme
Location: 41102 - 42502 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_43
Type: TC
Location: 42623 - 43966 (+)
Type: TC
Location: 42623 - 43966 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_44
Type: TC
Location: 44128 - 44430 (+)
Type: TC
Location: 44128 - 44430 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_45
Type: pfam
Location: 44440 - 44772 (+)
Type: pfam
Location: 44440 - 44772 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_46
Type: sulfatase
Location: 44898 - 45581 (+)
Type: sulfatase
Location: 44898 - 45581 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_47
Type: TC
Location: 45591 - 45899 (+)
Type: TC
Location: 45591 - 45899 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_48
Type: STP
Location: 46088 - 47041 (+)
Type: STP
Location: 46088 - 47041 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_49
Type: pfam
Location: 47173 - 48096 (+)
Type: pfam
Location: 47173 - 48096 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_9297_50
Type: TC
Location: 48363 - 49721 (+)
Type: TC
Location: 48363 - 49721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.