Cluster: ShaoY_2019_ERR3406076_bin.13_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406076_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_12 | 16619 | 19069 | - | 4.A.1.1.8 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_13 | 19091 | 19210 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_14 | 19294 | 20013 | + | GntR |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_15 | 20320 | 21636 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_16 | 21724 | 22578 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_17 | 22578 | 23417 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_18 | 23486 | 24685 | + | 3.A.1.1.22 |
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_19 | 25059 | 27326 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_312 | ShaoY_2019_ERR3406076_bin.13_k141_312_20 | 27456 | 28961 | - | GH77 |
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_12
Type: TC
Location: 16619 - 19069 (-)
Type: TC
Location: 16619 - 19069 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_13
Type:
Location: 19091 - 19210 (+)
Type:
Location: 19091 - 19210 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_14
Type: TF
Location: 19294 - 20013 (+)
Type: TF
Location: 19294 - 20013 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_15
Type: TC
Location: 20320 - 21636 (+)
Type: TC
Location: 20320 - 21636 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_16
Type: TC
Location: 21724 - 22578 (+)
Type: TC
Location: 21724 - 22578 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_17
Type: TC
Location: 22578 - 23417 (+)
Type: TC
Location: 22578 - 23417 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_18
Type: TC
Location: 23486 - 24685 (+)
Type: TC
Location: 23486 - 24685 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_19
Type: CAZyme
Location: 25059 - 27326 (-)
Type: CAZyme
Location: 25059 - 27326 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_312_20
Type: CAZyme
Location: 27456 - 28961 (-)
Type: CAZyme
Location: 27456 - 28961 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.