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Cluster: ShaoY_2019_ERR3406052_bin.4_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_94 111901 113070 - CE9
STP ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_95 113187 114353 - SIS | SIS
TF ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_96 114465 115199 - GntR
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_97 115287 115715 - 4.A.6.1.8
NULL(UNKNOWN) ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_98 115797 116420 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_99 116609 117448 - 4.A.6.1.18
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_100 117438 118325 - 4.A.6.1.18
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_101 118419 118883 - 4.A.6.1.18
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_102 118886 120682 - GH35
pfam ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_103 121168 121641 - DUF386
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_104 121674 122843 - CE9
TF ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_105 122987 123718 - GntR
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_106 123951 125159 - 4.A.1.1.7
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_94
Type: CAZyme
Location: 111901 - 113070 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_95
Type: STP
Location: 113187 - 114353 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_96
Type: TF
Location: 114465 - 115199 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_97
Type: TC
Location: 115287 - 115715 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_98
Type:
Location: 115797 - 116420 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_99
Type: TC
Location: 116609 - 117448 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_100
Type: TC
Location: 117438 - 118325 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_101
Type: TC
Location: 118419 - 118883 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_102
Type: CAZyme
Location: 118886 - 120682 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_103
Type: pfam
Location: 121168 - 121641 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_104
Type: CAZyme
Location: 121674 - 122843 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_105
Type: TF
Location: 122987 - 123718 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_106
Type: TC
Location: 123951 - 125159 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406052_bin.4_k141_3442_99 vegetarian > vegan 2.29191 0.02258
ShaoY_2019_ERR3406052_bin.4_k141_3442_101 vegetarian > vegan 3.13533 0.02258
ShaoY_2019_ERR3406052_bin.4_k141_3442_102 vegetarian > vegan 2.55293 0.02258
ShaoY_2019_ERR3406052_bin.4_k141_3442_105 vegetarian > vegan 3.20330 0.02258

🧭 Explore Read Mapping of CGC

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