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Cluster: ShaoY_2019_ERR3406052_bin.4_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_72 83980 84318 - 4.A.3.1.2
TF ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_73 84533 85537 - LacI
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_74 85895 87670 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_75 87737 89176 + GH1
TF ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_76 89439 90476 - LacI
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_77 90818 92260 + GH1
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_78 92437 94197 + 4.A.3.1.1
TF ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_79 94531 95541 - LacI
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_80 95919 97595 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_81 97671 99092 + GH1
pfam ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_82 99458 100690 + Fic
STP ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_83 100728 101066 - DeoRC
TC ShaoY_2019_ERR3406052_bin.4_k141_3442 ShaoY_2019_ERR3406052_bin.4_k141_3442_84 101229 102923 - 4.A.3.1.1
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_72
Type: TC
Location: 83980 - 84318 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_73
Type: TF
Location: 84533 - 85537 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_74
Type: TC
Location: 85895 - 87670 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_75
Type: CAZyme
Location: 87737 - 89176 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_76
Type: TF
Location: 89439 - 90476 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_77
Type: CAZyme
Location: 90818 - 92260 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_78
Type: TC
Location: 92437 - 94197 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_79
Type: TF
Location: 94531 - 95541 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_80
Type: TC
Location: 95919 - 97595 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_81
Type: CAZyme
Location: 97671 - 99092 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_82
Type: pfam
Location: 99458 - 100690 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_83
Type: STP
Location: 100728 - 101066 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_3442_84
Type: TC
Location: 101229 - 102923 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406052_bin.4_k141_3442_76 vegetarian > omnivore 1.02109 0.02704

🧭 Explore Read Mapping of CGC

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