Cluster: ShaoY_2019_ERR3406052_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406052_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406052_bin.4_k141_1479 | ShaoY_2019_ERR3406052_bin.4_k141_1479_22 | 18950 | 19969 | + | GH109 |
| pfam | ShaoY_2019_ERR3406052_bin.4_k141_1479 | ShaoY_2019_ERR3406052_bin.4_k141_1479_23 | 20122 | 20988 | + | AP_endonuc_2 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_1479 | ShaoY_2019_ERR3406052_bin.4_k141_1479_24 | 21136 | 21996 | + | 3.A.1.3.15 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_1479 | ShaoY_2019_ERR3406052_bin.4_k141_1479_25 | 22113 | 23474 | + | 3.A.1.3.16 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_1479 | ShaoY_2019_ERR3406052_bin.4_k141_1479_26 | 23487 | 24239 | + | 3.A.1.3.20 |
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_1479_22
Type: CAZyme
Location: 18950 - 19969 (+)
Type: CAZyme
Location: 18950 - 19969 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_1479_23
Type: pfam
Location: 20122 - 20988 (+)
Type: pfam
Location: 20122 - 20988 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_1479_24
Type: TC
Location: 21136 - 21996 (+)
Type: TC
Location: 21136 - 21996 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_1479_25
Type: TC
Location: 22113 - 23474 (+)
Type: TC
Location: 22113 - 23474 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_1479_26
Type: TC
Location: 23487 - 24239 (+)
Type: TC
Location: 23487 - 24239 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.