Cluster: ShaoY_2019_ERR3406052_bin.4_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406052_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_60 | 67567 | 68943 | - | GH13_20 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_61 | 69097 | 70293 | - | 2.A.1.2.18 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_62 | 70415 | 72775 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_63 | 72845 | 73186 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_64 | 73317 | 74216 | - | S09.UPW |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_65 | 74460 | 75023 | + | 4.A.1.2.6 |
| pfam | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_66 | 75205 | 76608 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_67 | 76868 | 77653 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_68 | 77814 | 78794 | + | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_69 | 78998 | 79921 | + | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_10796 | ShaoY_2019_ERR3406052_bin.4_k141_10796_70 | 79914 | 80708 | + | 3.A.1.34.1 |
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_60
Type: CAZyme
Location: 67567 - 68943 (-)
Type: CAZyme
Location: 67567 - 68943 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_61
Type: TC
Location: 69097 - 70293 (-)
Type: TC
Location: 69097 - 70293 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_62
Type: TC
Location: 70415 - 72775 (-)
Type: TC
Location: 70415 - 72775 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_63
Type:
Location: 72845 - 73186 (-)
Type:
Location: 72845 - 73186 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_64
Type: peptidase
Location: 73317 - 74216 (-)
Type: peptidase
Location: 73317 - 74216 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_65
Type: TC
Location: 74460 - 75023 (+)
Type: TC
Location: 74460 - 75023 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_66
Type: pfam
Location: 75205 - 76608 (+)
Type: pfam
Location: 75205 - 76608 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_67
Type:
Location: 76868 - 77653 (+)
Type:
Location: 76868 - 77653 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_68
Type: TC
Location: 77814 - 78794 (+)
Type: TC
Location: 77814 - 78794 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_69
Type: TC
Location: 78998 - 79921 (+)
Type: TC
Location: 78998 - 79921 (+)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_10796_70
Type: TC
Location: 79914 - 80708 (+)
Type: TC
Location: 79914 - 80708 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.