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Cluster: ShaoY_2019_ERR3406052_bin.4_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_9609 ShaoY_2019_ERR3406052_bin.4_k141_9609_159 177835 178959 - GH172
pfam ShaoY_2019_ERR3406052_bin.4_k141_9609 ShaoY_2019_ERR3406052_bin.4_k141_9609_160 178972 179370 - EIIA-man
TC ShaoY_2019_ERR3406052_bin.4_k141_9609 ShaoY_2019_ERR3406052_bin.4_k141_9609_161 179397 180230 - 4.A.6.1.13
TC ShaoY_2019_ERR3406052_bin.4_k141_9609 ShaoY_2019_ERR3406052_bin.4_k141_9609_162 180233 181018 - 4.A.6.1.13
TC ShaoY_2019_ERR3406052_bin.4_k141_9609 ShaoY_2019_ERR3406052_bin.4_k141_9609_163 181028 181501 - 4.A.6.1.18
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_159
Type: CAZyme
Location: 177835 - 178959 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_160
Type: pfam
Location: 178972 - 179370 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_161
Type: TC
Location: 179397 - 180230 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_162
Type: TC
Location: 180233 - 181018 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_163
Type: TC
Location: 181028 - 181501 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406052_bin.4_k141_9609_163 vegan > omnivore 1.03033 0.03201

🧭 Explore Read Mapping of CGC

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