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Cluster: ShaoY_2019_ERR3406052_bin.4_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_1 468 2201 - GH13_30
STP ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_2 2787 3533 - STAS
STP ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_3 3615 5960 - GAF | SpoIIE
TC ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_4 6703 7731 - 3.A.1.5.36
TC ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_5 7731 8822 - 3.A.1.5.34
TC ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_6 8825 9760 - 3.A.1.5.11
TC ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_7 9775 10812 - 3.A.1.5.37
TC ShaoY_2019_ERR3406052_bin.4_k141_555 ShaoY_2019_ERR3406052_bin.4_k141_555_8 10969 12645 - 3.A.1.5.35
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_1
Type: CAZyme
Location: 468 - 2201 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_2
Type: STP
Location: 2787 - 3533 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_3
Type: STP
Location: 3615 - 5960 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_4
Type: TC
Location: 6703 - 7731 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_5
Type: TC
Location: 7731 - 8822 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_6
Type: TC
Location: 8825 - 9760 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_7
Type: TC
Location: 9775 - 10812 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_555_8
Type: TC
Location: 10969 - 12645 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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