Cluster: ShaoY_2019_ERR3405990_bin.18_CGC7
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- CGC Family ID: CGCFAM_00010
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_4 | 2496 | 4721 | - | 9.B.74.1.1 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_5 | 4732 | 7365 | - | 9.B.74.1.1 |
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_6 | 7629 | 9962 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_7 | 9949 | 11472 | - | GH77 |
| TF | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_8 | 11512 | 12525 | - | LacI |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_9 | 12559 | 13395 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_10 | 13395 | 14258 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_17324 | ShaoY_2019_ERR3405990_bin.18_k141_17324_11 | 14425 | 15789 | - | 3.A.1.1.45 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_4
Type: TC
Location: 2496 - 4721 (-)
Type: TC
Location: 2496 - 4721 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_5
Type: TC
Location: 4732 - 7365 (-)
Type: TC
Location: 4732 - 7365 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_6
Type: CAZyme
Location: 7629 - 9962 (-)
Type: CAZyme
Location: 7629 - 9962 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_7
Type: CAZyme
Location: 9949 - 11472 (-)
Type: CAZyme
Location: 9949 - 11472 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_8
Type: TF
Location: 11512 - 12525 (-)
Type: TF
Location: 11512 - 12525 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_9
Type: TC
Location: 12559 - 13395 (-)
Type: TC
Location: 12559 - 13395 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_10
Type: TC
Location: 13395 - 14258 (-)
Type: TC
Location: 13395 - 14258 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_17324_11
Type: TC
Location: 14425 - 15789 (-)
Type: TC
Location: 14425 - 15789 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.