Cluster: ShaoY_2019_ERR3405990_bin.18_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405990_bin.18_k141_9767 | ShaoY_2019_ERR3405990_bin.18_k141_9767_7 | 5818 | 7323 | + | 3.A.1.2.1 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_9767 | ShaoY_2019_ERR3405990_bin.18_k141_9767_8 | 7316 | 8281 | + | 3.A.1.2.1 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_9767 | ShaoY_2019_ERR3405990_bin.18_k141_9767_9 | 8312 | 9280 | + | 3.A.1.2.1 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_9767 | ShaoY_2019_ERR3405990_bin.18_k141_9767_10 | 9359 | 10192 | - | DegV |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_9767 | ShaoY_2019_ERR3405990_bin.18_k141_9767_11 | 10414 | 11214 | - | DNA_binding_1 | PNPOx_N | Pyridox_ox_2 |
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_9767 | ShaoY_2019_ERR3405990_bin.18_k141_9767_12 | 11340 | 12821 | + | AA7 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_9767_7
Type: TC
Location: 5818 - 7323 (+)
Type: TC
Location: 5818 - 7323 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_9767_8
Type: TC
Location: 7316 - 8281 (+)
Type: TC
Location: 7316 - 8281 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_9767_9
Type: TC
Location: 8312 - 9280 (+)
Type: TC
Location: 8312 - 9280 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_9767_10
Type: pfam
Location: 9359 - 10192 (-)
Type: pfam
Location: 9359 - 10192 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_9767_11
Type: pfam
Location: 10414 - 11214 (-)
Type: pfam
Location: 10414 - 11214 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_9767_12
Type: CAZyme
Location: 11340 - 12821 (+)
Type: CAZyme
Location: 11340 - 12821 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.