Cluster: ShaoY_2019_ERR3405990_bin.18_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- CGC Family ID: CGCFAM_05176
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_4657 | ShaoY_2019_ERR3405990_bin.18_k141_4657_28 | 24292 | 26958 | - | GH24 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_4657 | ShaoY_2019_ERR3405990_bin.18_k141_4657_29 | 27253 | 28125 | - | DegV |
| TF | ShaoY_2019_ERR3405990_bin.18_k141_4657 | ShaoY_2019_ERR3405990_bin.18_k141_4657_30 | 28329 | 28700 | + | GntR |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4657 | ShaoY_2019_ERR3405990_bin.18_k141_4657_31 | 28700 | 29398 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405990_bin.18_k141_4657 | ShaoY_2019_ERR3405990_bin.18_k141_4657_32 | 29392 | 30177 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4657 | ShaoY_2019_ERR3405990_bin.18_k141_4657_33 | 30237 | 31274 | - | 2.A.26.1.9 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4657_28
Type: CAZyme
Location: 24292 - 26958 (-)
Type: CAZyme
Location: 24292 - 26958 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4657_29
Type: pfam
Location: 27253 - 28125 (-)
Type: pfam
Location: 27253 - 28125 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4657_30
Type: TF
Location: 28329 - 28700 (+)
Type: TF
Location: 28329 - 28700 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4657_31
Type: TC
Location: 28700 - 29398 (+)
Type: TC
Location: 28700 - 29398 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4657_32
Type:
Location: 29392 - 30177 (+)
Type:
Location: 29392 - 30177 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4657_33
Type: TC
Location: 30237 - 31274 (-)
Type: TC
Location: 30237 - 31274 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.