Cluster: ShaoY_2019_ERR3405990_bin.18_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_8 | 6675 | 7424 | + | 3.A.1.23.8 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_9 | 7417 | 7722 | + | CbiN |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_10 | 7719 | 8504 | + | CbiQ |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_11 | 8501 | 9340 | + | 3.A.1.23.8 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_12 | 9379 | 9792 | - | DUF3783 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_13 | 9789 | 10604 | - | adh_short | Epimerase | KR | adh_short_C2 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_14 | 10773 | 13433 | - | 3.A.3.2.21 |
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_15 | 14197 | 15174 | + | GH109 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_16 | 15300 | 16310 | + | 3.A.1.15.11 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_17 | 16348 | 17109 | + | 3.A.1.15.1 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_18 | 17181 | 18002 | + | 3.A.1.15.11 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_4018 | ShaoY_2019_ERR3405990_bin.18_k141_4018_19 | 18032 | 19054 | + | 9.B.10.1.1 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_8
Type: TC
Location: 6675 - 7424 (+)
Type: TC
Location: 6675 - 7424 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_9
Type: pfam
Location: 7417 - 7722 (+)
Type: pfam
Location: 7417 - 7722 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_10
Type: pfam
Location: 7719 - 8504 (+)
Type: pfam
Location: 7719 - 8504 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_11
Type: TC
Location: 8501 - 9340 (+)
Type: TC
Location: 8501 - 9340 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_12
Type: pfam
Location: 9379 - 9792 (-)
Type: pfam
Location: 9379 - 9792 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_13
Type: pfam
Location: 9789 - 10604 (-)
Type: pfam
Location: 9789 - 10604 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_14
Type: TC
Location: 10773 - 13433 (-)
Type: TC
Location: 10773 - 13433 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_15
Type: CAZyme
Location: 14197 - 15174 (+)
Type: CAZyme
Location: 14197 - 15174 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_16
Type: TC
Location: 15300 - 16310 (+)
Type: TC
Location: 15300 - 16310 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_17
Type: TC
Location: 16348 - 17109 (+)
Type: TC
Location: 16348 - 17109 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_18
Type: TC
Location: 17181 - 18002 (+)
Type: TC
Location: 17181 - 18002 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_4018_19
Type: TC
Location: 18032 - 19054 (+)
Type: TC
Location: 18032 - 19054 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.