Cluster: ShaoY_2019_ERR3405990_bin.18_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- CGC Family ID: CGCFAM_02150
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_48 | 56694 | 57551 | - | 3.A.1.24.5 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_49 | 57587 | 58246 | - | 3.A.1.24.5 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_50 | 58236 | 59261 | - | 3.A.1.24.2 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_51 | 59589 | 60986 | - | 9.B.18.1.1 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_52 | 61225 | 62406 | + | EpsG |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_53 | 62526 | 63953 | - | 2.A.25.1.9 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_54 | 64037 | 65935 | - | CN_hydrolase | NAD_synthase |
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_55 | 66184 | 67176 | - | GT2 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_56 | 67215 | 68882 | - | VanW | G5 | PG_binding_4 |
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_29708 | ShaoY_2019_ERR3405990_bin.18_k141_29708_57 | 69226 | 70383 | + | GT28 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_48
Type: TC
Location: 56694 - 57551 (-)
Type: TC
Location: 56694 - 57551 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_49
Type: TC
Location: 57587 - 58246 (-)
Type: TC
Location: 57587 - 58246 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_50
Type: TC
Location: 58236 - 59261 (-)
Type: TC
Location: 58236 - 59261 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_51
Type: TC
Location: 59589 - 60986 (-)
Type: TC
Location: 59589 - 60986 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_52
Type: pfam
Location: 61225 - 62406 (+)
Type: pfam
Location: 61225 - 62406 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_53
Type: TC
Location: 62526 - 63953 (-)
Type: TC
Location: 62526 - 63953 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_54
Type: pfam
Location: 64037 - 65935 (-)
Type: pfam
Location: 64037 - 65935 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_55
Type: CAZyme
Location: 66184 - 67176 (-)
Type: CAZyme
Location: 66184 - 67176 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_56
Type: pfam
Location: 67215 - 68882 (-)
Type: pfam
Location: 67215 - 68882 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_29708_57
Type: CAZyme
Location: 69226 - 70383 (+)
Type: CAZyme
Location: 69226 - 70383 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.