Cluster: ShaoY_2019_ERR3405990_bin.18_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_4 | 1822 | 3285 | + | GH25 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_5 | 3466 | 3723 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_6 | 3723 | 5261 | - | Lyase_aromatic |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_7 | 5242 | 6885 | - | 2.A.15.1.8 |
| TF | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_8 | 7214 | 8872 | + | HTH_8 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_9 | 9146 | 10033 | + | DegV |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_10 | 10667 | 11470 | + | 1.A.30.1.5 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_28219 | ShaoY_2019_ERR3405990_bin.18_k141_28219_11 | 11492 | 12343 | + | 1.A.30.1.3 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_4
Type: CAZyme
Location: 1822 - 3285 (+)
Type: CAZyme
Location: 1822 - 3285 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_5
Type:
Location: 3466 - 3723 (-)
Type:
Location: 3466 - 3723 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_6
Type: pfam
Location: 3723 - 5261 (-)
Type: pfam
Location: 3723 - 5261 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_7
Type: TC
Location: 5242 - 6885 (-)
Type: TC
Location: 5242 - 6885 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_8
Type: TF
Location: 7214 - 8872 (+)
Type: TF
Location: 7214 - 8872 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_9
Type: pfam
Location: 9146 - 10033 (+)
Type: pfam
Location: 9146 - 10033 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_10
Type: TC
Location: 10667 - 11470 (+)
Type: TC
Location: 10667 - 11470 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_28219_11
Type: TC
Location: 11492 - 12343 (+)
Type: TC
Location: 11492 - 12343 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.