Cluster: ShaoY_2019_ERR3405990_bin.18_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_7 | 4582 | 5568 | - | 2.A.98.1.4 |
| TF | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_8 | 5678 | 6589 | + | HTH_1 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_9 | 6626 | 7402 | - | Glucosamine_iso |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_10 | 7427 | 8254 | - | 3.A.1.1.18 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_11 | 8281 | 8961 | - | BPD_transp_1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_12 | 9007 | 9174 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_13 | 9268 | 10584 | - | 3.A.1.1.24 |
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_23633 | ShaoY_2019_ERR3405990_bin.18_k141_23633_14 | 10981 | 12180 | - | CE9 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_7
Type: TC
Location: 4582 - 5568 (-)
Type: TC
Location: 4582 - 5568 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_8
Type: TF
Location: 5678 - 6589 (+)
Type: TF
Location: 5678 - 6589 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_9
Type: pfam
Location: 6626 - 7402 (-)
Type: pfam
Location: 6626 - 7402 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_10
Type: TC
Location: 7427 - 8254 (-)
Type: TC
Location: 7427 - 8254 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_11
Type: pfam
Location: 8281 - 8961 (-)
Type: pfam
Location: 8281 - 8961 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_12
Type:
Location: 9007 - 9174 (-)
Type:
Location: 9007 - 9174 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_13
Type: TC
Location: 9268 - 10584 (-)
Type: TC
Location: 9268 - 10584 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_23633_14
Type: CAZyme
Location: 10981 - 12180 (-)
Type: CAZyme
Location: 10981 - 12180 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.