Cluster: ShaoY_2019_ERR3405984_bin.12_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405984_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405984_bin.12_k141_9447 | ShaoY_2019_ERR3405984_bin.12_k141_9447_2 | 2354 | 2680 | + | 4.A.3.2.7 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_9447 | ShaoY_2019_ERR3405984_bin.12_k141_9447_3 | 2727 | 3020 | + | 4.A.3.2.6 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_9447 | ShaoY_2019_ERR3405984_bin.12_k141_9447_4 | 3030 | 4379 | + | 4.A.3.2.6 |
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_9447 | ShaoY_2019_ERR3405984_bin.12_k141_9447_5 | 4381 | 5835 | + | GH1 |
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_9447_2
Type: TC
Location: 2354 - 2680 (+)
Type: TC
Location: 2354 - 2680 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_9447_3
Type: TC
Location: 2727 - 3020 (+)
Type: TC
Location: 2727 - 3020 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_9447_4
Type: TC
Location: 3030 - 4379 (+)
Type: TC
Location: 3030 - 4379 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_9447_5
Type: CAZyme
Location: 4381 - 5835 (+)
Type: CAZyme
Location: 4381 - 5835 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp938045065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405984_bin.12_k141_9447_2 | vegetarian > vegan | 1.28260 | 0.04711 |
| ShaoY_2019_ERR3405984_bin.12_k141_9447_3 | vegetarian > vegan | 2.00369 | 0.04711 |
| ShaoY_2019_ERR3405984_bin.12_k141_9447_4 | vegetarian > vegan | 1.77646 | 0.04711 |
| ShaoY_2019_ERR3405984_bin.12_k141_9447_5 | vegetarian > vegan | 1.95996 | 0.04711 |