Cluster: ShaoY_2019_ERR3405984_bin.12_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405984_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_10 | 9679 | 11184 | + | GH77 |
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_11 | 11314 | 13581 | + | GT35 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_12 | 14039 | 15238 | - | 3.A.1.1.22 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_13 | 15307 | 16146 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_14 | 16146 | 17000 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_15 | 17088 | 18404 | - | 3.A.1.1.45 |
| TF | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_16 | 18711 | 19430 | - | GntR |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6848 | ShaoY_2019_ERR3405984_bin.12_k141_6848_17 | 19693 | 22110 | + | 4.A.1.1.8 |
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_10
Type: CAZyme
Location: 9679 - 11184 (+)
Type: CAZyme
Location: 9679 - 11184 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_11
Type: CAZyme
Location: 11314 - 13581 (+)
Type: CAZyme
Location: 11314 - 13581 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_12
Type: TC
Location: 14039 - 15238 (-)
Type: TC
Location: 14039 - 15238 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_13
Type: TC
Location: 15307 - 16146 (-)
Type: TC
Location: 15307 - 16146 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_14
Type: TC
Location: 16146 - 17000 (-)
Type: TC
Location: 16146 - 17000 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_15
Type: TC
Location: 17088 - 18404 (-)
Type: TC
Location: 17088 - 18404 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_16
Type: TF
Location: 18711 - 19430 (-)
Type: TF
Location: 18711 - 19430 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6848_17
Type: TC
Location: 19693 - 22110 (+)
Type: TC
Location: 19693 - 22110 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp938045065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.