Cluster: ShaoY_2019_ERR3405984_bin.12_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405984_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_6684 | ShaoY_2019_ERR3405984_bin.12_k141_6684_69 | 77240 | 80248 | + | GH2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405984_bin.12_k141_6684 | ShaoY_2019_ERR3405984_bin.12_k141_6684_70 | 80252 | 80707 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6684 | ShaoY_2019_ERR3405984_bin.12_k141_6684_71 | 80861 | 82324 | + | 2.A.3.7.4 |
| STP | ShaoY_2019_ERR3405984_bin.12_k141_6684 | ShaoY_2019_ERR3405984_bin.12_k141_6684_72 | 82746 | 82994 | + | PTS-HPr |
| STP | ShaoY_2019_ERR3405984_bin.12_k141_6684 | ShaoY_2019_ERR3405984_bin.12_k141_6684_73 | 83183 | 83425 | + | FeoA |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6684 | ShaoY_2019_ERR3405984_bin.12_k141_6684_74 | 83466 | 83687 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_6684 | ShaoY_2019_ERR3405984_bin.12_k141_6684_75 | 83811 | 86138 | + | 9.A.8.1.6 |
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6684_69
Type: CAZyme
Location: 77240 - 80248 (+)
Type: CAZyme
Location: 77240 - 80248 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6684_70
Type:
Location: 80252 - 80707 (+)
Type:
Location: 80252 - 80707 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6684_71
Type: TC
Location: 80861 - 82324 (+)
Type: TC
Location: 80861 - 82324 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6684_72
Type: STP
Location: 82746 - 82994 (+)
Type: STP
Location: 82746 - 82994 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6684_73
Type: STP
Location: 83183 - 83425 (+)
Type: STP
Location: 83183 - 83425 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6684_74
Type: TC
Location: 83466 - 83687 (+)
Type: TC
Location: 83466 - 83687 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_6684_75
Type: TC
Location: 83811 - 86138 (+)
Type: TC
Location: 83811 - 86138 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp938045065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.