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Cluster: ShaoY_2019_ERR3405984_bin.12_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_115 137164 137502 - 4.A.3.1.2
TF ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_116 137717 138721 - LacI
TC ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_117 139079 140854 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_118 140921 142360 + GH1
TF ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_119 142638 143675 - LacI
CAZyme ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_120 144017 145459 + GH1
TC ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_121 145636 147396 + 4.A.3.1.1
TF ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_122 147735 148745 - LacI
TC ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_123 149021 150799 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_124 150875 152296 + GH1
pfam ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_125 152665 153897 + Fic
STP ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_126 154006 154401 - DeoRC
TC ShaoY_2019_ERR3405984_bin.12_k141_2464 ShaoY_2019_ERR3405984_bin.12_k141_2464_127 154564 156258 - 4.A.3.1.1
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_115
Type: TC
Location: 137164 - 137502 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_116
Type: TF
Location: 137717 - 138721 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_117
Type: TC
Location: 139079 - 140854 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_118
Type: CAZyme
Location: 140921 - 142360 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_119
Type: TF
Location: 142638 - 143675 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_120
Type: CAZyme
Location: 144017 - 145459 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_121
Type: TC
Location: 145636 - 147396 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_122
Type: TF
Location: 147735 - 148745 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_123
Type: TC
Location: 149021 - 150799 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_124
Type: CAZyme
Location: 150875 - 152296 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_125
Type: pfam
Location: 152665 - 153897 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_126
Type: STP
Location: 154006 - 154401 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_2464_127
Type: TC
Location: 154564 - 156258 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405984_bin.12_k141_2464_119 vegetarian > omnivore 1.03151 0.00403

🧭 Explore Read Mapping of CGC

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