Cluster: ShaoY_2019_ERR3405984_bin.12_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405984_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405984_bin.12_k141_32787 | ShaoY_2019_ERR3405984_bin.12_k141_32787_28 | 30242 | 31009 | - | 3.A.1.103.1 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_32787 | ShaoY_2019_ERR3405984_bin.12_k141_32787_29 | 31022 | 31867 | - | 3.A.1.103.6 |
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_32787 | ShaoY_2019_ERR3405984_bin.12_k141_32787_30 | 32029 | 32958 | + | GT81 |
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_32787 | ShaoY_2019_ERR3405984_bin.12_k141_32787_31 | 32990 | 34831 | - | GT2 |
| pfam | ShaoY_2019_ERR3405984_bin.12_k141_32787 | ShaoY_2019_ERR3405984_bin.12_k141_32787_32 | 34864 | 36051 | - | LicD |
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_32787 | ShaoY_2019_ERR3405984_bin.12_k141_32787_33 | 36151 | 38031 | - | GT2 |
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_32787_28
Type: TC
Location: 30242 - 31009 (-)
Type: TC
Location: 30242 - 31009 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_32787_29
Type: TC
Location: 31022 - 31867 (-)
Type: TC
Location: 31022 - 31867 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_32787_30
Type: CAZyme
Location: 32029 - 32958 (+)
Type: CAZyme
Location: 32029 - 32958 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_32787_31
Type: CAZyme
Location: 32990 - 34831 (-)
Type: CAZyme
Location: 32990 - 34831 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_32787_32
Type: pfam
Location: 34864 - 36051 (-)
Type: pfam
Location: 34864 - 36051 (-)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_32787_33
Type: CAZyme
Location: 36151 - 38031 (-)
Type: CAZyme
Location: 36151 - 38031 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp938045065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405984_bin.12_k141_32787_29 | vegan > omnivore | 2.52004 | 0.00566 |
| ShaoY_2019_ERR3405984_bin.12_k141_32787_30 | vegan > omnivore | 1.63681 | 0.00566 |
| ShaoY_2019_ERR3405984_bin.12_k141_32787_31 | vegan > omnivore | 17.81586 | 0.00566 |
| ShaoY_2019_ERR3405984_bin.12_k141_32787_31 | vegetarian > omnivore | 13.79681 | 0.00403 |
| ShaoY_2019_ERR3405984_bin.12_k141_32787_32 | vegan > omnivore | 18.00565 | 0.00566 |
| ShaoY_2019_ERR3405984_bin.12_k141_32787_33 | vegan > omnivore | 10.33774 | 0.00566 |