Cluster: ShaoY_2019_ERR3405984_bin.12_CGC15
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405984_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_60 | 62715 | 63158 | + | 4.A.6.1.16 |
| pfam | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_61 | 63158 | 63439 | + | YajC |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_62 | 63476 | 63958 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_63 | 64049 | 64849 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_64 | 64839 | 65921 | + | 4.A.6.1.4 |
| TF | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_65 | 66107 | 66838 | + | GntR |
| STP | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_66 | 66953 | 68119 | + | SIS | SIS |
| CAZyme | ShaoY_2019_ERR3405984_bin.12_k141_20982 | ShaoY_2019_ERR3405984_bin.12_k141_20982_67 | 68237 | 69406 | + | CE9 |
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_60
Type: TC
Location: 62715 - 63158 (+)
Type: TC
Location: 62715 - 63158 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_61
Type: pfam
Location: 63158 - 63439 (+)
Type: pfam
Location: 63158 - 63439 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_62
Type: TC
Location: 63476 - 63958 (+)
Type: TC
Location: 63476 - 63958 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_63
Type: TC
Location: 64049 - 64849 (+)
Type: TC
Location: 64049 - 64849 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_64
Type: TC
Location: 64839 - 65921 (+)
Type: TC
Location: 64839 - 65921 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_65
Type: TF
Location: 66107 - 66838 (+)
Type: TF
Location: 66107 - 66838 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_66
Type: STP
Location: 66953 - 68119 (+)
Type: STP
Location: 66953 - 68119 (+)
Gene ID: ShaoY_2019_ERR3405984_bin.12_k141_20982_67
Type: CAZyme
Location: 68237 - 69406 (+)
Type: CAZyme
Location: 68237 - 69406 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp938045065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.