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Cluster: ShaoY_2019_ERR3405930_bin.6_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_8 6497 7666 - CE9
STP ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_9 7783 8949 - SIS | SIS
TF ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_10 9061 9795 - GntR
TC ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_11 9883 10311 - 4.A.6.1.8
NULL(UNKNOWN) ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_12 10393 11016 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_13 11205 12044 - 4.A.6.1.18
TC ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_14 12034 12921 - 4.A.6.1.18
TC ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_15 13015 13479 - 4.A.6.1.18
CAZyme ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_16 13482 15278 - GH35
pfam ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_17 15764 16237 - DUF386
CAZyme ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_18 16270 17439 - CE9
TF ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_19 17583 18314 - GntR
TC ShaoY_2019_ERR3405930_bin.6_k141_9571 ShaoY_2019_ERR3405930_bin.6_k141_9571_20 18547 20001 - 4.A.1.1.7
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_8
Type: CAZyme
Location: 6497 - 7666 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_9
Type: STP
Location: 7783 - 8949 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_10
Type: TF
Location: 9061 - 9795 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_11
Type: TC
Location: 9883 - 10311 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_12
Type:
Location: 10393 - 11016 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_13
Type: TC
Location: 11205 - 12044 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_14
Type: TC
Location: 12034 - 12921 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_15
Type: TC
Location: 13015 - 13479 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_16
Type: CAZyme
Location: 13482 - 15278 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_17
Type: pfam
Location: 15764 - 16237 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_18
Type: CAZyme
Location: 16270 - 17439 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_19
Type: TF
Location: 17583 - 18314 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_9571_20
Type: TC
Location: 18547 - 20001 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405930_bin.6_k141_9571_13 vegetarian > vegan 2.38445 0.00776
ShaoY_2019_ERR3405930_bin.6_k141_9571_15 vegetarian > vegan 3.22941 0.00776
ShaoY_2019_ERR3405930_bin.6_k141_9571_16 vegetarian > vegan 2.65102 0.00776
ShaoY_2019_ERR3405930_bin.6_k141_9571_19 vegetarian > vegan 3.13864 0.00776

🧭 Explore Read Mapping of CGC

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