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Cluster: ShaoY_2019_ERR3405930_bin.6_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405930_bin.6_k141_28323 ShaoY_2019_ERR3405930_bin.6_k141_28323_1 73 1494 - GH1
TC ShaoY_2019_ERR3405930_bin.6_k141_28323 ShaoY_2019_ERR3405930_bin.6_k141_28323_2 1572 3350 - 4.A.3.1.1
TF ShaoY_2019_ERR3405930_bin.6_k141_28323 ShaoY_2019_ERR3405930_bin.6_k141_28323_3 3627 4637 + LacI
CAZyme ShaoY_2019_ERR3405930_bin.6_k141_28323 ShaoY_2019_ERR3405930_bin.6_k141_28323_4 4821 6260 - GH1
TC ShaoY_2019_ERR3405930_bin.6_k141_28323 ShaoY_2019_ERR3405930_bin.6_k141_28323_5 6327 8102 - 4.A.3.1.1
TF ShaoY_2019_ERR3405930_bin.6_k141_28323 ShaoY_2019_ERR3405930_bin.6_k141_28323_6 8460 9464 + LacI
TC ShaoY_2019_ERR3405930_bin.6_k141_28323 ShaoY_2019_ERR3405930_bin.6_k141_28323_7 9679 10017 + 4.A.3.1.2
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_28323_1
Type: CAZyme
Location: 73 - 1494 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_28323_2
Type: TC
Location: 1572 - 3350 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_28323_3
Type: TF
Location: 3627 - 4637 (+)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_28323_4
Type: CAZyme
Location: 4821 - 6260 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_28323_5
Type: TC
Location: 6327 - 8102 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_28323_6
Type: TF
Location: 8460 - 9464 (+)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_28323_7
Type: TC
Location: 9679 - 10017 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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