Cluster: ShaoY_2019_ERR3405930_bin.6_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405930_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_27 | 21981 | 23714 | - | GH13_30 |
| STP | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_28 | 24300 | 25046 | - | STAS |
| STP | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_29 | 25128 | 27473 | - | GAF | SpoIIE |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_30 | 28215 | 29243 | - | 3.A.1.5.36 |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_31 | 29244 | 30335 | - | 3.A.1.5.34 |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_32 | 30338 | 31273 | - | 3.A.1.5.11 |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_33 | 31288 | 32325 | - | 3.A.1.5.37 |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_26305 | ShaoY_2019_ERR3405930_bin.6_k141_26305_34 | 32482 | 34158 | - | 3.A.1.5.35 |
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_27
Type: CAZyme
Location: 21981 - 23714 (-)
Type: CAZyme
Location: 21981 - 23714 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_28
Type: STP
Location: 24300 - 25046 (-)
Type: STP
Location: 24300 - 25046 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_29
Type: STP
Location: 25128 - 27473 (-)
Type: STP
Location: 25128 - 27473 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_30
Type: TC
Location: 28215 - 29243 (-)
Type: TC
Location: 28215 - 29243 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_31
Type: TC
Location: 29244 - 30335 (-)
Type: TC
Location: 29244 - 30335 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_32
Type: TC
Location: 30338 - 31273 (-)
Type: TC
Location: 30338 - 31273 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_33
Type: TC
Location: 31288 - 32325 (-)
Type: TC
Location: 31288 - 32325 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_26305_34
Type: TC
Location: 32482 - 34158 (-)
Type: TC
Location: 32482 - 34158 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.