Cluster: ShaoY_2019_ERR3405930_bin.6_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3405930_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_5 | 2808 | 4493 | - | GH154 |
| CAZyme | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_6 | 4509 | 5729 | - | GH28 |
| CAZyme | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_7 | 5756 | 6781 | - | GH43_24 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_8 | 6783 | 7583 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_9 | 7583 | 9250 | - | CBM91 | GH43_11 |
| pfam | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_10 | 9260 | 10114 | - | Hydrolase_3 |
| CAZyme | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_11 | 10108 | 11259 | - | GH88 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_12 | 11240 | 11884 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_13 | 11981 | 12856 | - | 4.A.6.1.19 |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_14 | 12849 | 13718 | - | 4.A.6.1.6 |
| TC | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_15 | 13791 | 14273 | - | 4.A.6.1.16 |
| pfam | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_16 | 14339 | 14770 | - | EIIA-man |
| CAZyme | ShaoY_2019_ERR3405930_bin.6_k141_21625 | ShaoY_2019_ERR3405930_bin.6_k141_21625_17 | 14949 | 16766 | - | GH154 |
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_5
Type: CAZyme
Location: 2808 - 4493 (-)
Type: CAZyme
Location: 2808 - 4493 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_6
Type: CAZyme
Location: 4509 - 5729 (-)
Type: CAZyme
Location: 4509 - 5729 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_7
Type: CAZyme
Location: 5756 - 6781 (-)
Type: CAZyme
Location: 5756 - 6781 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_8
Type:
Location: 6783 - 7583 (-)
Type:
Location: 6783 - 7583 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_9
Type: CAZyme
Location: 7583 - 9250 (-)
Type: CAZyme
Location: 7583 - 9250 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_10
Type: pfam
Location: 9260 - 10114 (-)
Type: pfam
Location: 9260 - 10114 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_11
Type: CAZyme
Location: 10108 - 11259 (-)
Type: CAZyme
Location: 10108 - 11259 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_12
Type:
Location: 11240 - 11884 (-)
Type:
Location: 11240 - 11884 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_13
Type: TC
Location: 11981 - 12856 (-)
Type: TC
Location: 11981 - 12856 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_14
Type: TC
Location: 12849 - 13718 (-)
Type: TC
Location: 12849 - 13718 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_15
Type: TC
Location: 13791 - 14273 (-)
Type: TC
Location: 13791 - 14273 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_16
Type: pfam
Location: 14339 - 14770 (-)
Type: pfam
Location: 14339 - 14770 (-)
Gene ID: ShaoY_2019_ERR3405930_bin.6_k141_21625_17
Type: CAZyme
Location: 14949 - 16766 (-)
Type: CAZyme
Location: 14949 - 16766 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.