Cluster: ShaoY_2019_ERR3405919_bin.15_CGC2

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	ShaoY_2019_ERR3405919_bin.15_k141_5457	ShaoY_2019_ERR3405919_bin.15_k141_5457_13	11221	12324	-	CE9
TF	ShaoY_2019_ERR3405919_bin.15_k141_5457	ShaoY_2019_ERR3405919_bin.15_k141_5457_14	12533	13387	+	HTH_AraC \| HTH_AraC
TC	ShaoY_2019_ERR3405919_bin.15_k141_5457	ShaoY_2019_ERR3405919_bin.15_k141_5457_15	13529	14866	+	3.A.1.1.21
TC	ShaoY_2019_ERR3405919_bin.15_k141_5457	ShaoY_2019_ERR3405919_bin.15_k141_5457_16	14943	15830	+	3.A.1.1.25
TC	ShaoY_2019_ERR3405919_bin.15_k141_5457	ShaoY_2019_ERR3405919_bin.15_k141_5457_17	15830	16663	+	3.A.1.1.25
pfam	ShaoY_2019_ERR3405919_bin.15_k141_5457	ShaoY_2019_ERR3405919_bin.15_k141_5457_18	16694	17803	+	Semialdhyde_dh \| GFO_IDH_MocA \| GFO_IDH_MocA_C \| GFO_IDH_MocA_C3
CAZyme	ShaoY_2019_ERR3405919_bin.15_k141_5457	ShaoY_2019_ERR3405919_bin.15_k141_5457_19	17843	19987	+	CBM40 \| GH33

Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_5457_13
Type: CAZyme
Location: 11221 - 12324 (-)

Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_5457_14
Type: TF
Location: 12533 - 13387 (+)

Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_5457_15
Type: TC
Location: 13529 - 14866 (+)

Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_5457_16
Type: TC
Location: 14943 - 15830 (+)

Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_5457_17
Type: TC
Location: 15830 - 16663 (+)

Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_5457_18
Type: pfam
Location: 16694 - 17803 (+)

Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_5457_19
Type: CAZyme
Location: 17843 - 19987 (+)

Taxonomic Lineage

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Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.