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Cluster: ShaoY_2019_ERR3405919_bin.15_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_171 184948 186456 + 3.A.1.2.3
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_172 186475 188130 + 3.A.1.2.3
TF ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_173 188233 189843 + HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_174 189833 191668 + 8.A.59.2.1
STP ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_175 191683 192639 + Peripla_BP_1
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_176 192653 193696 + 3.A.1.2.3
CAZyme ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_177 193800 194951 + CE4
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_171
Type: TC
Location: 184948 - 186456 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_172
Type: TC
Location: 186475 - 188130 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_173
Type: TF
Location: 188233 - 189843 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_174
Type: TC
Location: 189833 - 191668 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_175
Type: STP
Location: 191683 - 192639 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_176
Type: TC
Location: 192653 - 193696 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_177
Type: CAZyme
Location: 193800 - 194951 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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