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Cluster: ShaoY_2019_ERR3405919_bin.15_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_32 44910 46310 + 2.A.25.1.5
pfam ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_33 46362 47102 - Acyltransferase
pfam ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_34 47276 47665 + PrcB_C
CAZyme ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_35 47681 49240 + CBM50
pfam ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_36 49395 50267 + GHMP_kinases_N | GHMP_kinases_C
TF ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_37 50273 50938 + GntR
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_38 51138 52634 + 9.A.11.1.2
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_32
Type: TC
Location: 44910 - 46310 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_33
Type: pfam
Location: 46362 - 47102 (-)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_34
Type: pfam
Location: 47276 - 47665 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_35
Type: CAZyme
Location: 47681 - 49240 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_36
Type: pfam
Location: 49395 - 50267 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_37
Type: TF
Location: 50273 - 50938 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_38
Type: TC
Location: 51138 - 52634 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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