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Cluster: ShaoY_2019_ERR3405919_bin.15_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_21 27070 28386 + 3.A.1.1.4
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_22 28482 29363 + 3.A.1.1.4
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_23 29356 30201 + 3.A.1.1.4
CAZyme ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_24 30229 33258 + GH2
TF ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_25 33404 34945 + HTH_AraC | HTH_AraC
STP ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_26 34942 36690 + HATPase_c | dCache_1
TC ShaoY_2019_ERR3405919_bin.15_k141_14184 ShaoY_2019_ERR3405919_bin.15_k141_14184_27 36769 39354 + 3.A.3.2.21
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_21
Type: TC
Location: 27070 - 28386 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_22
Type: TC
Location: 28482 - 29363 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_23
Type: TC
Location: 29356 - 30201 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_24
Type: CAZyme
Location: 30229 - 33258 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_25
Type: TF
Location: 33404 - 34945 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_26
Type: STP
Location: 34942 - 36690 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_14184_27
Type: TC
Location: 36769 - 39354 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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