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Cluster: ShaoY_2019_ERR3405919_bin.15_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405919_bin.15_k141_12844 ShaoY_2019_ERR3405919_bin.15_k141_12844_55 58460 59413 + 3.A.1.1.9
TC ShaoY_2019_ERR3405919_bin.15_k141_12844 ShaoY_2019_ERR3405919_bin.15_k141_12844_56 59425 60357 + 3.A.1.1.29
pfam ShaoY_2019_ERR3405919_bin.15_k141_12844 ShaoY_2019_ERR3405919_bin.15_k141_12844_57 60442 61893 + DUF3502
CAZyme ShaoY_2019_ERR3405919_bin.15_k141_12844 ShaoY_2019_ERR3405919_bin.15_k141_12844_58 61968 62954 + GH130_2
CAZyme ShaoY_2019_ERR3405919_bin.15_k141_12844 ShaoY_2019_ERR3405919_bin.15_k141_12844_59 63151 66240 + GH38
CAZyme ShaoY_2019_ERR3405919_bin.15_k141_12844 ShaoY_2019_ERR3405919_bin.15_k141_12844_60 66240 68486 + GH3
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_12844_55
Type: TC
Location: 58460 - 59413 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_12844_56
Type: TC
Location: 59425 - 60357 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_12844_57
Type: pfam
Location: 60442 - 61893 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_12844_58
Type: CAZyme
Location: 61968 - 62954 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_12844_59
Type: CAZyme
Location: 63151 - 66240 (+)
Gene ID: ShaoY_2019_ERR3405919_bin.15_k141_12844_60
Type: CAZyme
Location: 66240 - 68486 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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