Cluster: ShaoY_2019_ERR3405909_bin.4_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_7275 | ShaoY_2019_ERR3405909_bin.4_k141_7275_14 | 12102 | 13145 | + | GH3 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_7275 | ShaoY_2019_ERR3405909_bin.4_k141_7275_15 | 13142 | 14314 | + | MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7275 | ShaoY_2019_ERR3405909_bin.4_k141_7275_16 | 14348 | 15181 | - | 3.A.1.15.4 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7275 | ShaoY_2019_ERR3405909_bin.4_k141_7275_17 | 15174 | 16025 | - | 3.A.1.15.4 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7275 | ShaoY_2019_ERR3405909_bin.4_k141_7275_18 | 16029 | 16925 | - | 3.A.1.15.4 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7275 | ShaoY_2019_ERR3405909_bin.4_k141_7275_19 | 16925 | 17806 | - | 3.A.1.15.4 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7275_14
Type: CAZyme
Location: 12102 - 13145 (+)
Type: CAZyme
Location: 12102 - 13145 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7275_15
Type: pfam
Location: 13142 - 14314 (+)
Type: pfam
Location: 13142 - 14314 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7275_16
Type: TC
Location: 14348 - 15181 (-)
Type: TC
Location: 14348 - 15181 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7275_17
Type: TC
Location: 15174 - 16025 (-)
Type: TC
Location: 15174 - 16025 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7275_18
Type: TC
Location: 16029 - 16925 (-)
Type: TC
Location: 16029 - 16925 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7275_19
Type: TC
Location: 16925 - 17806 (-)
Type: TC
Location: 16925 - 17806 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_7275_15 | vegan > omnivore | 1.12925 | 0.00918 |
| ShaoY_2019_ERR3405909_bin.4_k141_7275_15 | vegetarian > omnivore | 1.15741 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_7275_16 | vegan > omnivore | 2.39849 | 0.00918 |
| ShaoY_2019_ERR3405909_bin.4_k141_7275_16 | vegetarian > omnivore | 1.65555 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_7275_17 | vegetarian > omnivore | 1.61881 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_7275_17 | vegan > omnivore | 2.23303 | 0.00918 |