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Cluster: ShaoY_2019_ERR3405909_bin.4_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_4415 ShaoY_2019_ERR3405909_bin.4_k141_4415_18 16455 18008 + AA1
pfam ShaoY_2019_ERR3405909_bin.4_k141_4415 ShaoY_2019_ERR3405909_bin.4_k141_4415_19 18102 18569 - SSB
pfam ShaoY_2019_ERR3405909_bin.4_k141_4415 ShaoY_2019_ERR3405909_bin.4_k141_4415_20 18732 21563 + UvrA_DNA-bind | UvrA_inter
TC ShaoY_2019_ERR3405909_bin.4_k141_4415 ShaoY_2019_ERR3405909_bin.4_k141_4415_21 21620 23146 - 2.A.1.3.2
TC ShaoY_2019_ERR3405909_bin.4_k141_4415 ShaoY_2019_ERR3405909_bin.4_k141_4415_22 23155 24324 - 8.A.1.1.1
TC ShaoY_2019_ERR3405909_bin.4_k141_4415 ShaoY_2019_ERR3405909_bin.4_k141_4415_23 24790 27354 + 1.B.40.2.2
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_18
Type: CAZyme
Location: 16455 - 18008 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_19
Type: pfam
Location: 18102 - 18569 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_20
Type: pfam
Location: 18732 - 21563 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_21
Type: TC
Location: 21620 - 23146 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_22
Type: TC
Location: 23155 - 24324 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_23
Type: TC
Location: 24790 - 27354 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405909_bin.4_k141_4415_19 vegan > omnivore 1.46395 0.00918

🧭 Explore Read Mapping of CGC

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