Cluster: ShaoY_2019_ERR3405909_bin.4_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- CGC Family ID: CGCFAM_01193
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_4415 | ShaoY_2019_ERR3405909_bin.4_k141_4415_1 | 1 | 1035 | - | CE4 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_4415 | ShaoY_2019_ERR3405909_bin.4_k141_4415_2 | 1057 | 2085 | - | 1.B.55.1.3 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_4415 | ShaoY_2019_ERR3405909_bin.4_k141_4415_3 | 2082 | 3464 | - | 1.B.55.1.3 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_4415 | ShaoY_2019_ERR3405909_bin.4_k141_4415_4 | 3674 | 4441 | - | 3.A.1.14.8 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_4415 | ShaoY_2019_ERR3405909_bin.4_k141_4415_5 | 4441 | 5424 | - | 3.A.1.14.1 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_4415 | ShaoY_2019_ERR3405909_bin.4_k141_4415_6 | 5424 | 6413 | - | 3.A.1.14.1 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_4415 | ShaoY_2019_ERR3405909_bin.4_k141_4415_7 | 6413 | 7303 | - | 3.A.1.14.1 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_1
Type: CAZyme
Location: 1 - 1035 (-)
Type: CAZyme
Location: 1 - 1035 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_2
Type: TC
Location: 1057 - 2085 (-)
Type: TC
Location: 1057 - 2085 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_3
Type: TC
Location: 2082 - 3464 (-)
Type: TC
Location: 2082 - 3464 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_4
Type: TC
Location: 3674 - 4441 (-)
Type: TC
Location: 3674 - 4441 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_5
Type: TC
Location: 4441 - 5424 (-)
Type: TC
Location: 4441 - 5424 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_6
Type: TC
Location: 5424 - 6413 (-)
Type: TC
Location: 5424 - 6413 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_4415_7
Type: TC
Location: 6413 - 7303 (-)
Type: TC
Location: 6413 - 7303 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_4415_6 | vegetarian > omnivore | 1.35248 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_4415_7 | vegetarian > omnivore | 1.47882 | 0.00878 |