dbCAN Logo

Cluster: ShaoY_2019_ERR3405909_bin.4_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_9 6945 8867 + 1.B.14.3.1
NULL(UNKNOWN) ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_10 8941 9726 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_11 10077 11054 + 3.A.1.14.20
TC ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_12 11047 11778 + 3.A.1.14.20
pfam ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_13 11827 12246 - NDK
peptidase ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_14 12257 13558 - M17.004
TC ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_15 13591 15009 - 9.B.18.1.2
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_16 15006 15824 - GT2
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_17 15929 16798 - GT2 | GT2
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_18 16791 17756 - GT2
pfam ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_19 17770 18150 - GtrA_DPMS_TM
pfam ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_20 18153 19484 - DUF2142
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_21 19489 22236 - GT4 | GT4
TC ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_22 22251 22985 - 3.A.1.103.1
TC ShaoY_2019_ERR3405909_bin.4_k141_13046 ShaoY_2019_ERR3405909_bin.4_k141_13046_23 22992 23777 - 3.A.1.103.4
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_9
Type: TC
Location: 6945 - 8867 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_10
Type:
Location: 8941 - 9726 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_11
Type: TC
Location: 10077 - 11054 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_12
Type: TC
Location: 11047 - 11778 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_13
Type: pfam
Location: 11827 - 12246 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_14
Type: peptidase
Location: 12257 - 13558 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_15
Type: TC
Location: 13591 - 15009 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_16
Type: CAZyme
Location: 15006 - 15824 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_17
Type: CAZyme
Location: 15929 - 16798 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_18
Type: CAZyme
Location: 16791 - 17756 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_19
Type: pfam
Location: 17770 - 18150 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_20
Type: pfam
Location: 18153 - 19484 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_21
Type: CAZyme
Location: 19489 - 22236 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_22
Type: TC
Location: 22251 - 22985 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_13046_23
Type: TC
Location: 22992 - 23777 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405909_bin.4_k141_13046_10 vegetarian > omnivore 1.06524 0.00878
ShaoY_2019_ERR3405909_bin.4_k141_13046_10 vegan > omnivore 1.13496 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_13046_11 vegetarian > omnivore 1.22569 0.00878
ShaoY_2019_ERR3405909_bin.4_k141_13046_12 vegetarian > omnivore 1.28590 0.00878
ShaoY_2019_ERR3405909_bin.4_k141_13046_12 vegan > omnivore 1.22475 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_13046_13 vegetarian > omnivore 1.44102 0.00878
ShaoY_2019_ERR3405909_bin.4_k141_13046_13 vegan > omnivore 1.60260 0.00918

🧭 Explore Read Mapping of CGC

← Back to Cluster List