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Cluster: ShaoY_2019_ERR3405909_bin.4_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405909_bin.4_k141_2659 ShaoY_2019_ERR3405909_bin.4_k141_2659_9 5577 6350 - 3.A.1.14.19
TC ShaoY_2019_ERR3405909_bin.4_k141_2659 ShaoY_2019_ERR3405909_bin.4_k141_2659_10 6350 7399 - 3.A.1.14.16
STP ShaoY_2019_ERR3405909_bin.4_k141_2659 ShaoY_2019_ERR3405909_bin.4_k141_2659_11 7415 8530 - Peripla_BP_2
pfam ShaoY_2019_ERR3405909_bin.4_k141_2659 ShaoY_2019_ERR3405909_bin.4_k141_2659_12 8627 9766 - CCP_MauG
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_2659 ShaoY_2019_ERR3405909_bin.4_k141_2659_13 9846 10319 - GH103
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_2659_9
Type: TC
Location: 5577 - 6350 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_2659_10
Type: TC
Location: 6350 - 7399 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_2659_11
Type: STP
Location: 7415 - 8530 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_2659_12
Type: pfam
Location: 8627 - 9766 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_2659_13
Type: CAZyme
Location: 9846 - 10319 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405909_bin.4_k141_2659_11 vegan > omnivore 1.76877 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_2659_11 vegetarian > omnivore 1.16351 0.00878

🧭 Explore Read Mapping of CGC

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