Cluster: ShaoY_2019_ERR3405909_bin.4_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405909_bin.4_k141_12928 | ShaoY_2019_ERR3405909_bin.4_k141_12928_9 | 8829 | 10199 | + | 2.A.25.1.4 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_12928 | ShaoY_2019_ERR3405909_bin.4_k141_12928_10 | 10441 | 10764 | + | Ribosomal_S30AE |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_12928 | ShaoY_2019_ERR3405909_bin.4_k141_12928_11 | 10830 | 13130 | - | 1.B.14.2.1 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_12928 | ShaoY_2019_ERR3405909_bin.4_k141_12928_12 | 13289 | 14440 | + | TbpB_B_D |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405909_bin.4_k141_12928 | ShaoY_2019_ERR3405909_bin.4_k141_12928_13 | 14488 | 14631 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_12928 | ShaoY_2019_ERR3405909_bin.4_k141_12928_14 | 14688 | 16082 | - | GH23 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_12928 | ShaoY_2019_ERR3405909_bin.4_k141_12928_15 | 16178 | 18028 | - | 3.A.18.1.1 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12928_9
Type: TC
Location: 8829 - 10199 (+)
Type: TC
Location: 8829 - 10199 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12928_10
Type: pfam
Location: 10441 - 10764 (+)
Type: pfam
Location: 10441 - 10764 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12928_11
Type: TC
Location: 10830 - 13130 (-)
Type: TC
Location: 10830 - 13130 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12928_12
Type: pfam
Location: 13289 - 14440 (+)
Type: pfam
Location: 13289 - 14440 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12928_13
Type:
Location: 14488 - 14631 (-)
Type:
Location: 14488 - 14631 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12928_14
Type: CAZyme
Location: 14688 - 16082 (-)
Type: CAZyme
Location: 14688 - 16082 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12928_15
Type: TC
Location: 16178 - 18028 (-)
Type: TC
Location: 16178 - 18028 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_12928_13 | vegetarian > omnivore | 1.84138 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_12928_14 | vegetarian > omnivore | 1.60405 | 0.00878 |