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Cluster: ShaoY_2019_ERR3405909_bin.4_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405909_bin.4_k141_12379 ShaoY_2019_ERR3405909_bin.4_k141_12379_6 4420 4725 + 9.B.21.2.1
TC ShaoY_2019_ERR3405909_bin.4_k141_12379 ShaoY_2019_ERR3405909_bin.4_k141_12379_7 4725 6590 + 2.A.16.2.2
pfam ShaoY_2019_ERR3405909_bin.4_k141_12379 ShaoY_2019_ERR3405909_bin.4_k141_12379_8 6632 8173 - PFL-like | YjjI-like
TC ShaoY_2019_ERR3405909_bin.4_k141_12379 ShaoY_2019_ERR3405909_bin.4_k141_12379_9 8364 9029 + 2.A.115.2.7
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_12379 ShaoY_2019_ERR3405909_bin.4_k141_12379_10 8979 10007 - GT9
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12379_6
Type: TC
Location: 4420 - 4725 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12379_7
Type: TC
Location: 4725 - 6590 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12379_8
Type: pfam
Location: 6632 - 8173 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12379_9
Type: TC
Location: 8364 - 9029 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_12379_10
Type: CAZyme
Location: 8979 - 10007 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405909_bin.4_k141_12379_9 vegan > omnivore 1.29814 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_12379_9 vegetarian > omnivore 1.53973 0.00878
ShaoY_2019_ERR3405909_bin.4_k141_12379_10 vegan > omnivore 1.54174 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_12379_10 vegetarian > omnivore 1.23110 0.00878

🧭 Explore Read Mapping of CGC

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