Cluster: ShaoY_2019_ERR3405909_bin.4_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_11149 | ShaoY_2019_ERR3405909_bin.4_k141_11149_18 | 16396 | 17523 | + | GH102 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_11149 | ShaoY_2019_ERR3405909_bin.4_k141_11149_19 | 17523 | 18284 | + | ThiF |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_11149 | ShaoY_2019_ERR3405909_bin.4_k141_11149_20 | 18452 | 19438 | + | 3.A.1.15.5 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_11149 | ShaoY_2019_ERR3405909_bin.4_k141_11149_21 | 19557 | 21692 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_11149 | ShaoY_2019_ERR3405909_bin.4_k141_11149_22 | 21728 | 23632 | - | 2.A.37.1.2 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_11149_18
Type: CAZyme
Location: 16396 - 17523 (+)
Type: CAZyme
Location: 16396 - 17523 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_11149_19
Type: pfam
Location: 17523 - 18284 (+)
Type: pfam
Location: 17523 - 18284 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_11149_20
Type: TC
Location: 18452 - 19438 (+)
Type: TC
Location: 18452 - 19438 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_11149_21
Type: pfam
Location: 19557 - 21692 (+)
Type: pfam
Location: 19557 - 21692 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_11149_22
Type: TC
Location: 21728 - 23632 (-)
Type: TC
Location: 21728 - 23632 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_11149_18 | vegetarian > omnivore | 1.11936 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_11149_19 | vegan > omnivore | 1.53553 | 0.00918 |
| ShaoY_2019_ERR3405909_bin.4_k141_11149_19 | vegetarian > omnivore | 1.50652 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_11149_21 | vegan > omnivore | 1.32629 | 0.00918 |
| ShaoY_2019_ERR3405909_bin.4_k141_11149_21 | vegetarian > omnivore | 1.33312 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_11149_22 | vegetarian > omnivore | 1.01979 | 0.00878 |