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Cluster: ShaoY_2019_ERR3405909_bin.4_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405909_bin.4_k141_10915 ShaoY_2019_ERR3405909_bin.4_k141_10915_1 2 1159 + 1.B.40.1.5
pfam ShaoY_2019_ERR3405909_bin.4_k141_10915 ShaoY_2019_ERR3405909_bin.4_k141_10915_2 1292 2428 + DUF2827
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_10915 ShaoY_2019_ERR3405909_bin.4_k141_10915_3 2463 3650 - GT4
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_10915 ShaoY_2019_ERR3405909_bin.4_k141_10915_4 3670 5211 - GT2
TC ShaoY_2019_ERR3405909_bin.4_k141_10915 ShaoY_2019_ERR3405909_bin.4_k141_10915_5 5220 6407 - 2.A.33.1.2
TC ShaoY_2019_ERR3405909_bin.4_k141_10915 ShaoY_2019_ERR3405909_bin.4_k141_10915_6 6617 7918 + 2.A.26.1.1
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10915_1
Type: TC
Location: 2 - 1159 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10915_2
Type: pfam
Location: 1292 - 2428 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10915_3
Type: CAZyme
Location: 2463 - 3650 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10915_4
Type: CAZyme
Location: 3670 - 5211 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10915_5
Type: TC
Location: 5220 - 6407 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10915_6
Type: TC
Location: 6617 - 7918 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405909_bin.4_k141_10915_1 vegetarian > omnivore 1.33484 0.00878

🧭 Explore Read Mapping of CGC

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