Cluster: ShaoY_2019_ERR3405909_bin.4_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405909_bin.4_k141_10578 | ShaoY_2019_ERR3405909_bin.4_k141_10578_7 | 6792 | 7910 | - | 1.B.1.3.3 |
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_10578 | ShaoY_2019_ERR3405909_bin.4_k141_10578_8 | 8076 | 9029 | - | GT9 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_10578 | ShaoY_2019_ERR3405909_bin.4_k141_10578_9 | 9026 | 9931 | - | 2.A.7.3.58 |
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_10578 | ShaoY_2019_ERR3405909_bin.4_k141_10578_10 | 9928 | 10971 | - | GT9 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10578_7
Type: TC
Location: 6792 - 7910 (-)
Type: TC
Location: 6792 - 7910 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10578_8
Type: CAZyme
Location: 8076 - 9029 (-)
Type: CAZyme
Location: 8076 - 9029 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10578_9
Type: TC
Location: 9026 - 9931 (-)
Type: TC
Location: 9026 - 9931 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10578_10
Type: CAZyme
Location: 9928 - 10971 (-)
Type: CAZyme
Location: 9928 - 10971 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_10578_8 | vegan > omnivore | 1.23453 | 0.00918 |
| ShaoY_2019_ERR3405909_bin.4_k141_10578_8 | vegetarian > omnivore | 1.64382 | 0.00878 |