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Cluster: ShaoY_2019_ERR3405909_bin.4_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405909_bin.4_k141_10209 ShaoY_2019_ERR3405909_bin.4_k141_10209_20 18561 20405 - 3.A.1.106.2
TF ShaoY_2019_ERR3405909_bin.4_k141_10209 ShaoY_2019_ERR3405909_bin.4_k141_10209_21 20482 21372 - HTH_AraC | HTH_AraC
pfam ShaoY_2019_ERR3405909_bin.4_k141_10209 ShaoY_2019_ERR3405909_bin.4_k141_10209_22 21476 21820 + CMD
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_10209 ShaoY_2019_ERR3405909_bin.4_k141_10209_23 21892 22947 - GT9
pfam ShaoY_2019_ERR3405909_bin.4_k141_10209 ShaoY_2019_ERR3405909_bin.4_k141_10209_24 23025 23750 + RIO1 | APH | Kdo
TC ShaoY_2019_ERR3405909_bin.4_k141_10209 ShaoY_2019_ERR3405909_bin.4_k141_10209_25 23795 25270 - 2.A.37.1.10
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10209_20
Type: TC
Location: 18561 - 20405 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10209_21
Type: TF
Location: 20482 - 21372 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10209_22
Type: pfam
Location: 21476 - 21820 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10209_23
Type: CAZyme
Location: 21892 - 22947 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10209_24
Type: pfam
Location: 23025 - 23750 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10209_25
Type: TC
Location: 23795 - 25270 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405909_bin.4_k141_10209_21 vegetarian > vegan 1.14923 0.04650
ShaoY_2019_ERR3405909_bin.4_k141_10209_22 vegan > omnivore 1.29899 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_10209_22 vegetarian > omnivore 1.64165 0.00878

🧭 Explore Read Mapping of CGC

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