Cluster: ShaoY_2019_ERR3405909_bin.4_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405909_bin.4_k141_10171 | ShaoY_2019_ERR3405909_bin.4_k141_10171_3 | 1961 | 2905 | + | 2.A.16.1.2 |
| TF | ShaoY_2019_ERR3405909_bin.4_k141_10171 | ShaoY_2019_ERR3405909_bin.4_k141_10171_4 | 2984 | 3697 | - | GntR |
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_10171 | ShaoY_2019_ERR3405909_bin.4_k141_10171_5 | 3890 | 7663 | + | GH77 | GT35 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_10171 | ShaoY_2019_ERR3405909_bin.4_k141_10171_6 | 7674 | 8465 | + | Exo_endo_phos |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_10171 | ShaoY_2019_ERR3405909_bin.4_k141_10171_7 | 8476 | 10140 | + | 4.A.1.1.11 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10171_3
Type: TC
Location: 1961 - 2905 (+)
Type: TC
Location: 1961 - 2905 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10171_4
Type: TF
Location: 2984 - 3697 (-)
Type: TF
Location: 2984 - 3697 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10171_5
Type: CAZyme
Location: 3890 - 7663 (+)
Type: CAZyme
Location: 3890 - 7663 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10171_6
Type: pfam
Location: 7674 - 8465 (+)
Type: pfam
Location: 7674 - 8465 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_10171_7
Type: TC
Location: 8476 - 10140 (+)
Type: TC
Location: 8476 - 10140 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_10171_7 | vegan > omnivore | 1.31331 | 0.00918 |