Cluster: ShaoY_2019_ERR3405909_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_78 | 77126 | 77842 | - | 9.B.20.2.2 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_79 | 78008 | 79345 | + | UPF0004 | TRAM | Radical_SAM | TRAM_2 |
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_80 | 79385 | 81403 | + | GT41 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_78
Type: TC
Location: 77126 - 77842 (-)
Type: TC
Location: 77126 - 77842 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_79
Type: pfam
Location: 78008 - 79345 (+)
Type: pfam
Location: 78008 - 79345 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_80
Type: CAZyme
Location: 79385 - 81403 (+)
Type: CAZyme
Location: 79385 - 81403 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_7555_78 | vegetarian > omnivore | 1.24665 | 0.00878 |