Cluster: ShaoY_2019_ERR3405909_bin.4_CGC10
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405909_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_7 | 5260 | 6645 | - | 2.A.47.5.2 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_8 | 6801 | 8027 | - | 2.A.1.12.1 |
| TF | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_9 | 8202 | 8912 | + | GntR |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_10 | 8902 | 9975 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3 |
| CAZyme | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_11 | 9986 | 11092 | + | GH177 |
| pfam | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_12 | 11168 | 11800 | - | PNPOx_N | PNP_phzG_C | Pyridox_oxase_2 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_13 | 11867 | 13513 | - | 3.A.1.5.27 |
| TC | ShaoY_2019_ERR3405909_bin.4_k141_7555 | ShaoY_2019_ERR3405909_bin.4_k141_7555_14 | 13647 | 15056 | - | 2.A.1.3.51 |
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_7
Type: TC
Location: 5260 - 6645 (-)
Type: TC
Location: 5260 - 6645 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_8
Type: TC
Location: 6801 - 8027 (-)
Type: TC
Location: 6801 - 8027 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_9
Type: TF
Location: 8202 - 8912 (+)
Type: TF
Location: 8202 - 8912 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_10
Type: pfam
Location: 8902 - 9975 (+)
Type: pfam
Location: 8902 - 9975 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_11
Type: CAZyme
Location: 9986 - 11092 (+)
Type: CAZyme
Location: 9986 - 11092 (+)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_12
Type: pfam
Location: 11168 - 11800 (-)
Type: pfam
Location: 11168 - 11800 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_13
Type: TC
Location: 11867 - 13513 (-)
Type: TC
Location: 11867 - 13513 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_7555_14
Type: TC
Location: 13647 - 15056 (-)
Type: TC
Location: 13647 - 15056 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405909_bin.4_k141_7555_12 | vegetarian > omnivore | 1.07947 | 0.00878 |
| ShaoY_2019_ERR3405909_bin.4_k141_7555_13 | vegan > omnivore | 1.13375 | 0.00918 |