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Cluster: ShaoY_2019_ERR3405909_bin.4_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405909_bin.4_k141_477 ShaoY_2019_ERR3405909_bin.4_k141_477_27 25837 28863 - GH2
pfam ShaoY_2019_ERR3405909_bin.4_k141_477 ShaoY_2019_ERR3405909_bin.4_k141_477_28 28985 30184 - PMI_typeI_cat | MPI_cupin_dom
TC ShaoY_2019_ERR3405909_bin.4_k141_477 ShaoY_2019_ERR3405909_bin.4_k141_477_29 30258 30758 - 4.A.1.1.1
TC ShaoY_2019_ERR3405909_bin.4_k141_477 ShaoY_2019_ERR3405909_bin.4_k141_477_30 30818 32545 - 8.A.7.1.1
TC ShaoY_2019_ERR3405909_bin.4_k141_477 ShaoY_2019_ERR3405909_bin.4_k141_477_31 32625 32882 - 8.A.8.1.1
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_477_27
Type: CAZyme
Location: 25837 - 28863 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_477_28
Type: pfam
Location: 28985 - 30184 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_477_29
Type: TC
Location: 30258 - 30758 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_477_30
Type: TC
Location: 30818 - 32545 (-)
Gene ID: ShaoY_2019_ERR3405909_bin.4_k141_477_31
Type: TC
Location: 32625 - 32882 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405909_bin.4_k141_477_29 vegan > omnivore 2.61002 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_477_29 vegetarian > omnivore 1.64883 0.00878
ShaoY_2019_ERR3405909_bin.4_k141_477_30 vegan > omnivore 1.03189 0.00918
ShaoY_2019_ERR3405909_bin.4_k141_477_30 vegetarian > omnivore 1.02567 0.00878
ShaoY_2019_ERR3405909_bin.4_k141_477_31 vegetarian > omnivore 1.13578 0.00878

🧭 Explore Read Mapping of CGC

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