Cluster: ShaoY_2019_ERR3405906_bin.7_CGC5
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405906_bin.7
- CGC Family ID: CGCFAM_00518
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_43 | 41382 | 44282 | - | 3.A.17.1.1 |
| pfam | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_44 | 44545 | 45477 | + | DUF3829 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_45 | 45522 | 47015 | - | 3.A.1.5.3 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_46 | 46999 | 47820 | - | 3.A.1.5.12 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_47 | 47813 | 48610 | - | 3.A.1.5.25 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_48 | 48623 | 50188 | - | 3.A.1.5.3 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_49 | 50275 | 51096 | - | 3.A.1.5.38 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_50 | 51096 | 52034 | - | 3.A.1.5.11 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_51 | 52681 | 54015 | - | 2.A.3.2.1 |
| pfam | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_52 | 54529 | 55956 | - | Lyase_1 | ASL_C2 |
| pfam | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_53 | 55956 | 57167 | - | Arginosuc_synth | Arginosuc_syn_C |
| CAZyme | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_54 | 57364 | 58269 | - | GT51 |
| pfam | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_55 | 58369 | 58647 | + | Trns_repr_metal |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_56 | 58693 | 58953 | - | 8.A.8.1.1 |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_57 | 59071 | 60798 | - | 8.A.7.1.1 |
| pfam | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_58 | 61014 | 61847 | + | DAP_epimerase | DAP_epimerase |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_59 | 61906 | 63243 | + | 2.A.35.1.2 |
| STP | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_60 | 63282 | 64190 | + | PfkB |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_61 | 64231 | 66213 | + | 4.A.2.1.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_62 | 66339 | 66917 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_63 | 66926 | 67510 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405906_bin.7_k141_1571 | ShaoY_2019_ERR3405906_bin.7_k141_1571_64 | 67709 | 73597 | - | 1.B.40.2.2 |
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_43
Type: TC
Location: 41382 - 44282 (-)
Type: TC
Location: 41382 - 44282 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_44
Type: pfam
Location: 44545 - 45477 (+)
Type: pfam
Location: 44545 - 45477 (+)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_45
Type: TC
Location: 45522 - 47015 (-)
Type: TC
Location: 45522 - 47015 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_46
Type: TC
Location: 46999 - 47820 (-)
Type: TC
Location: 46999 - 47820 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_47
Type: TC
Location: 47813 - 48610 (-)
Type: TC
Location: 47813 - 48610 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_48
Type: TC
Location: 48623 - 50188 (-)
Type: TC
Location: 48623 - 50188 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_49
Type: TC
Location: 50275 - 51096 (-)
Type: TC
Location: 50275 - 51096 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_50
Type: TC
Location: 51096 - 52034 (-)
Type: TC
Location: 51096 - 52034 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_51
Type: TC
Location: 52681 - 54015 (-)
Type: TC
Location: 52681 - 54015 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_52
Type: pfam
Location: 54529 - 55956 (-)
Type: pfam
Location: 54529 - 55956 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_53
Type: pfam
Location: 55956 - 57167 (-)
Type: pfam
Location: 55956 - 57167 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_54
Type: CAZyme
Location: 57364 - 58269 (-)
Type: CAZyme
Location: 57364 - 58269 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_55
Type: pfam
Location: 58369 - 58647 (+)
Type: pfam
Location: 58369 - 58647 (+)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_56
Type: TC
Location: 58693 - 58953 (-)
Type: TC
Location: 58693 - 58953 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_57
Type: TC
Location: 59071 - 60798 (-)
Type: TC
Location: 59071 - 60798 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_58
Type: pfam
Location: 61014 - 61847 (+)
Type: pfam
Location: 61014 - 61847 (+)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_59
Type: TC
Location: 61906 - 63243 (+)
Type: TC
Location: 61906 - 63243 (+)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_60
Type: STP
Location: 63282 - 64190 (+)
Type: STP
Location: 63282 - 64190 (+)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_61
Type: TC
Location: 64231 - 66213 (+)
Type: TC
Location: 64231 - 66213 (+)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_62
Type:
Location: 66339 - 66917 (-)
Type:
Location: 66339 - 66917 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_63
Type:
Location: 66926 - 67510 (-)
Type:
Location: 66926 - 67510 (-)
Gene ID: ShaoY_2019_ERR3405906_bin.7_k141_1571_64
Type: TC
Location: 67709 - 73597 (-)
Type: TC
Location: 67709 - 73597 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Species
Veillonella sp934230905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.