Cluster: ShaoY_2019_ERR3405884_bin.3_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405884_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_3 | 5215 | 5973 | + | GT2 |
| pfam | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_4 | 5986 | 7116 | + | Glycos_transf_1 |
| CAZyme | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_5 | 7171 | 8343 | + | GT4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_6 | 8358 | 8576 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_7 | 8717 | 9349 | + | Glyco_trans_1_2 |
| CAZyme | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_8 | 9374 | 10363 | + | GT9 |
| CAZyme | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_9 | 10408 | 11487 | + | GT9 |
| pfam | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_10 | 11465 | 12631 | + | Wzy_C |
| pfam | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_11 | 13130 | 13783 | + | PDDEXK_2 |
| TC | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_12 | 14250 | 15677 | + | 9.B.18.1.2 |
| CAZyme | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_13 | 15677 | 16456 | + | GT111 |
| TC | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_14 | 16429 | 17232 | + | 3.A.1.103.6 |
| TC | ShaoY_2019_ERR3405884_bin.3_k141_4984 | ShaoY_2019_ERR3405884_bin.3_k141_4984_15 | 17264 | 18001 | + | 3.A.1.103.1 |
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_3
Type: CAZyme
Location: 5215 - 5973 (+)
Type: CAZyme
Location: 5215 - 5973 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_4
Type: pfam
Location: 5986 - 7116 (+)
Type: pfam
Location: 5986 - 7116 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_5
Type: CAZyme
Location: 7171 - 8343 (+)
Type: CAZyme
Location: 7171 - 8343 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_6
Type:
Location: 8358 - 8576 (+)
Type:
Location: 8358 - 8576 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_7
Type: pfam
Location: 8717 - 9349 (+)
Type: pfam
Location: 8717 - 9349 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_8
Type: CAZyme
Location: 9374 - 10363 (+)
Type: CAZyme
Location: 9374 - 10363 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_9
Type: CAZyme
Location: 10408 - 11487 (+)
Type: CAZyme
Location: 10408 - 11487 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_10
Type: pfam
Location: 11465 - 12631 (+)
Type: pfam
Location: 11465 - 12631 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_11
Type: pfam
Location: 13130 - 13783 (+)
Type: pfam
Location: 13130 - 13783 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_12
Type: TC
Location: 14250 - 15677 (+)
Type: TC
Location: 14250 - 15677 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_13
Type: CAZyme
Location: 15677 - 16456 (+)
Type: CAZyme
Location: 15677 - 16456 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_14
Type: TC
Location: 16429 - 17232 (+)
Type: TC
Location: 16429 - 17232 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_4984_15
Type: TC
Location: 17264 - 18001 (+)
Type: TC
Location: 17264 - 18001 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
CAMBIX01
Species
CAMBIX01 sp945867815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.