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Cluster: ShaoY_2019_ERR3405884_bin.3_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405884_bin.3_k141_3232 ShaoY_2019_ERR3405884_bin.3_k141_3232_129 147292 148107 - GT51
TC ShaoY_2019_ERR3405884_bin.3_k141_3232 ShaoY_2019_ERR3405884_bin.3_k141_3232_130 148469 148729 - 8.A.8.1.2
TC ShaoY_2019_ERR3405884_bin.3_k141_3232 ShaoY_2019_ERR3405884_bin.3_k141_3232_131 148759 150489 - 8.A.7.1.1
pfam ShaoY_2019_ERR3405884_bin.3_k141_3232 ShaoY_2019_ERR3405884_bin.3_k141_3232_132 150633 151472 - DAP_epimerase | DAP_epimerase
STP ShaoY_2019_ERR3405884_bin.3_k141_3232 ShaoY_2019_ERR3405884_bin.3_k141_3232_133 152065 152985 + PfkB
TC ShaoY_2019_ERR3405884_bin.3_k141_3232 ShaoY_2019_ERR3405884_bin.3_k141_3232_134 153051 155111 + 4.A.2.1.4
TC ShaoY_2019_ERR3405884_bin.3_k141_3232 ShaoY_2019_ERR3405884_bin.3_k141_3232_135 155325 156548 + 2.A.1.17.3
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_3232_129
Type: CAZyme
Location: 147292 - 148107 (-)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_3232_130
Type: TC
Location: 148469 - 148729 (-)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_3232_131
Type: TC
Location: 148759 - 150489 (-)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_3232_132
Type: pfam
Location: 150633 - 151472 (-)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_3232_133
Type: STP
Location: 152065 - 152985 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_3232_134
Type: TC
Location: 153051 - 155111 (+)
Gene ID: ShaoY_2019_ERR3405884_bin.3_k141_3232_135
Type: TC
Location: 155325 - 156548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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